The real sleeper issue here, as it is with much of the political warfare of the present day, is money. Liberty magazine has consistently warned church organizations against taking state money. We have from the very beginning of the Faith-Based Initiative of the previous administration (an initiative still alive and kicking against the First Amendment establishment prick) warned that it is inimical to church-state separation for public monies to be used to advance any particular faith view. So it would seem a little ungrateful to the public purse for a church to object when the state applies generally applicable regulations to an operation it might tend to see as its pocket money project.